Bioinformatics - SciTok - SciTok

Bioinformatics 64 Projects

The Druggable Genome as Seen from the Protein Data Bank

Jiayan Wang

1 views • 1 year ago

Unheeded SARS-CoV-2 protein? Look deep into negative-sense RNA

Martin Bartas

0 views • 1 year ago

In-depth Bioinformatic Analyses of Human SARS-CoV-2, SARS-CoV, MERS-CoV, and Other Nidovirales Suggest Important Roles of Noncanonical Nucleic Acid Structures in Their Lifecycles

Martin Bartas

0 views • 1 year ago

The changes in the p53 protein across the animal kingdom pointing to its involvement in longevity

Vaclav Brazda

0 views • 1 year ago

Stability of the vaginal microbiota during pregnancy and its importance for early infant colonization

Martin S. Mortensen

0 views • 1 year ago

Integrated molecular, clinical, and ontological analysis identifies overlooked disease relationships

Winston A. Haynes

0 views • 1 year ago

COVID-19: Viral-host interactome analyzed by network based-approach model to study pathogenesis of SARS-CoV-2 infection.

Francesco Messina

0 views • 1 year ago

Sequence Analysis for SNP Detection and Phylogenetic Reconstruction of SARS-CoV-2 Isolated from Nigerian COVID-19 Cases

Idowu A. Taiwo

0 views • 1 year ago

Indoril: An I-PV Add-On For Visualization Of Point Mutations On 3D Cartesian Coordinates

Ibrahim Tanyalcin

0 views • 1 year ago

PEDIA: Prioritization of Exome Data by Image Analysis

Tzung-Chien Hsieh

0 views • 1 year ago

ProLego: tool for extracting and visualizing topological modules in protein structures

Taushif Khan

0 views • 1 year ago

DrugOrchestra: Jointly predicting drug response, targets, and side effects via deep multi-task learning

Yuepeng Jiang

0 views • 1 year ago

A Literature-Based Knowledge Graph Embedding Method for Identifying Drug Repurposing Opportunities in Rare Diseases

Daniel N. Sosa

0 views • 1 year ago

RedMed: Extending drug lexicons for social media applications

Adam Lavertu

1 views • 1 year ago

Discovering novel cell types across heterogeneous single-cell experiments

Maria Brbić

0 views • 1 year ago

Transfer learning enables prediction of CYP2D6 haplotype function

Greg McInnes

0 views • 1 year ago

Graph Convolutional Neural Networks for Predicting Drug-Target Interactions

Wen Torng

0 views • 1 year ago

Pathway and network embedding methods for prioritizing psychiatric drugs

Yash Pershad

0 views • 1 year ago

GRep: Gene Set Representation via Gaussian Embedding

Sheng Wang

0 views • 1 year ago

Analyzing the vast coronavirus literature with CoronaCentral

Jake Lever

0 views • 1 year ago

Quantifying the severity of adverse drug reactions using social media

Adam Lavertu

0 views • 1 year ago

Application of new informatics tools for identifying allosteric lead ligands of the c-Src kinase

Lili X Peng

1 views • 1 year ago

Large-Scale Labeling and Assessment of Sex Bias in Publicly Available Expression Data

Emily Flynn

0 views • 1 year ago

Biomedical Graph Visualizer for Identifying Drug Candidates

Ashton Teng

0 views • 1 year ago

Unifying single-cell annotations based on the Cell Ontology

Sheng Wang

0 views • 1 year ago

Protein sequence design with a learned potential

Namrata Anand-Achim

0 views • 1 year ago

Systematic comparative analysis of Mendelian randomization methods for inferring causal genes of complex phenotypes and the application to psychiatric diseases

Lin Jiang

0 views • 1 year ago

Gene annotation bias impedes biomedical research

Winston A. Haynes

0 views • 1 year ago

Empowering Multi-Cohort Gene Expression Analysis to Increase Reproducibility

Winston A. Haynes

0 views • 1 year ago

Interpretation of biological experiments changes with evolution of Gene Ontology and its annotations

Aurelie Tomczak

0 views • 1 year ago

Mortality prediction in sepsis via gene expression analysis: a community approach

Timothy E Sweeney

0 views • 1 year ago

Leveraging heterogeneity across multiple data sets increases accuracy of cell-mixture deconvolution and reduces biological and technical biases

Francesco Vallania

0 views • 1 year ago

Semi-Parametric Covariate-Modulated Local False Discovery Rate For Genome-Wide Association Studies

Rong W. Zablocki

0 views • 1 year ago

Different Perspective of Machine Learning Technique to Better Predict Breast Cancer Survival

Kaushal Kumar

0 views • 1 year ago

Mutational signatures in countries affected by SARS-CoV-2: Implications in host-pathogen interactome

J. Singh

0 views • 1 year ago

Characterising Complex Enzyme Reaction Data

Handan Melike Dönertaş

0 views • 1 year ago

The Image Data Resource: A Scalable Platform for Biological Image Data Access, Integration, and Dissemination

Eleanor Williams

0 views • 1 year ago

Transcriptomics data availability and reusability in the transition from microarray to next-generation sequencing

Gabriella Rustici

0 views • 1 year ago

Identification of Common Molecular Signatures Shared between Alzheimer's and Parkinson's Diseases and Therapeutic Agents Exploration: An Integrated Genomics Approach

Nairita Ahsan Faruqui

0 views • 1 year ago

Integrative Network Fusion: a multi-omics approach in molecular profiling

Marco Chierici

0 views • 1 year ago

CIDER: a pipeline for detecting waves of coordinated transcriptional regulation in gene expression time-course data

Marco Mina

0 views • 1 year ago

Evaluating reproducibility of AI algorithms in digital pathology with DAPPER

Andrea Bizzego

0 views • 1 year ago

REDCRAFT: A Computational Platform Using Residual Dipolar Coupling NMR Data for Determining Structures of Perdeuterated Proteins Without NOEs

Casey A. Cole

0 views • 1 year ago

Considerations and complications of mapping small RNA libraries to transposable elements

Alexandros Bousios

0 views • 1 year ago

HapSolo: An optimization approach for removing secondary haplotigs during diploid genome assembly and scaffolding

Edwin A. Solares

0 views • 1 year ago

Organisation of feed-forward loop motifs reveals architectural principles in natural and engineered networks

Thomas E. Gorochowski

0 views • 1 year ago

CHIPS: A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data

Len Taing

0 views • 1 year ago

CovRadar: Continuously tracking and filtering SARS-CoV-2 mutations for molecular surveillance

Alice Wittig

0 views • 1 year ago

Evaluating single-cell cluster stability using the Jaccard similarity index

Ming Tang

0 views • 1 year ago

HieRFIT: Hierarchical Random Forest for Information Transfer

Yasin Kaymaz

0 views • 1 year ago

A Novel Index for Predicting Health Status Using Species-level Gut Microbiome Profiling

Vinod K Gupta

0 views • 1 year ago

Single-Cell Mass Cytometry on Peripheral Blood Identifies Immune Cell Subsets Associated with Primary Biliary Cholangitis

Jin Sung Jang

0 views • 1 year ago

Knowledge graph analytics platform with LINCS and IDG for Parkinson's disease target illumination

Jeremy J Yang

0 views • 1 year ago

Comprehensive statistical inference of the clonal structure of cancer from multiple biopsies

Jie Liu

0 views • 1 year ago

Cysteine proteases of human hookworm Necator Americanus as virulence factors and implications for drug design with anti-heparin and heparin analogs: A bioinformatics study

Arpita Banerjee

0 views • 1 year ago

Identification and design of vinyl sulfone inhibitors against Cryptopain1-a cysteine protease from cryptosporidiosis-causing Cryptosporidium parvum

Arpita Banerjee

0 views • 1 year ago

New Techniques for Ancient Proteins: Direct Coupling Analysis Applied on Proteins involved in Iron Sulfur Cluster Biogenesis

Marco Fantini

0 views • 1 year ago

Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and highlights inflammatory programs in putative target cells

Christoph Muus

0 views • 1 year ago

Evolutionary and structural analyses of SARS-CoV-2 D614G spike protein mutation now documented worldwide

Sandra Isabel

0 views • 1 year ago

ChIPSeqSpike: A R Bioconductor package for ChIP-Seq data scaling according to spike-in control

Nicolas Descostes

0 views • 1 year ago

A Biological Inventory of Prophages in A baumannii Genomes Reveal Distinct Distributions in Classes, Length and Genomic Positions

Belinda Loh

0 views • 1 year ago

Real-Time Point Process Filter for Multidimensional Decoding Problems Using Mixture Models

Ali Yousefi

0 views • 1 year ago

Bayesian Decoder Models with a Discriminative Observation Process

Mohammad Reza Rezaei

0 views • 1 year ago

Deep Recurrent Neural Network and Point Process Filter Approaches in Multidimensional Neural Decoding Problems

Mohammad Reza Rezaei

0 views • 1 year ago