Unheeded SARS-CoV-2 protein? Look deep into negative-sense RNA

0 views • Oct 1, 2021
0
Save
Cite
Share

Author(s)

Author Name

Uploader

Martin Bartas

Published 3 Projects

Bioinformatics

Adriana Volna

Published 3 Projects

Bioinformatics

Vaclav Brazda

Published 3 Projects

Bioinformatics

Jiri Cerven

Published 3 Projects

Bioinformatics

Petr Pecinka

Published 3 Projects

Bioinformatics

Add New Author

SARS-CoV-2 is a novel ssRNA+ virus from the Coronaviridae family, which has caused the global COVID-19 pandemic. The genome of SARS-CoV-2 is one of the largest of RNA viruses, comprising of 26 known protein-coding loci. This study aimed to explore the coding potential of negative-strand RNA intermediate for its potential to contain additional protein coding-loci. Surprisingly, we have found several putative ORFs and one brandt new functional SARS-CoV-2 protein-coding loci and called it Avo1 (Ambient viral ORF1). This sequence is located on negative-sense RNA intermediate and bona fide coding for 81 amino acid residues long protein and contains strong Kozak sequence for translation on eukaryotic ribosomes. In silico translated protein Avo1 has a predominantly alpha-helical structure. The existence of Avo1 gene is supported also by its evolutionarily and structural conservation in RaTG13 bat coronavirus. The nucleotide sequence of Avo1 also contains a unique SREBP2 binding site which is closely related to the so-called cytokine storm in severe COVID-19 patients. Altogether, our results suggest the existence of still undescribed SARS-CoV-2 protein, which may play an important role in the viral lifecycle and COVID-19 pathogenesis.

Bioinformatics
Bioinformatics 64 Projects