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Video Abstract (AI generated) (01:25) Paper Preprint Supplementary Information (covradar,"")The ongoing pandemic caused by SARS-CoV-2 emphasizes the importance of molecular surveillance to understand the evolution of the virus and to monitor and plan the epidemiological responses. Quick analysis, easy visualization and convenient filtering of the latest viral sequences are essential for this purpose. We present CovRadar, a tool for molecular surveillance of the Corona spike protein. The spike protein contains the receptor binding domain (RBD) that is used as a target for most vaccine candidates. CovRadar consists of a workflow pipeline and a web application that enable the analysis and visualization of over 250,000 sequences. First, CovRadar extracts the regions of interest using local alignment, then builds a multiple sequence alignment, infers variants, consensus sequences and phylogenetic trees and finally presents the results in an interactive PDF-like app, making reporting fast, easy and flexible. CovRadar is freely accessible at https://covradar.net, its open-source code is available at https://gitlab.com/dacs-hpi/covradar.
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Ming Tang. (2021, Nov 4).CovRadar: Continuously tracking and filtering SARS-CoV-2 mutations for molecular surveillance[Video]. Scitok. https://scitok.com/project/p/b3a161cf
Wittig Alice. "CovRadar: Continuously tracking and filtering SARS-CoV-2 mutations for molecular surveillance" Scitok, uploaded by Tang Ming, 4 Nov, 2021, https://scitok.com/project/pb3a161cf
Ming Tang. "CovRadar: Continuously tracking and filtering SARS-CoV-2 mutations for molecular surveillance" Scitok. (Nov 4, 2021). https://scitok.com/project/p/b3a161cf
Ming Tang (Nov 4, 2021). CovRadar: Continuously tracking and filtering SARS-CoV-2 mutations for molecular surveillance Scitok. https://scitok.com/project/p/b3a161cf
Ming Tang. CovRadar: Continuously tracking and filtering SARS-CoV-2 mutations for molecular surveillance[video]. 2021 Nov 4. https://scitok.com/project/p/b3a161cf
@online{al2006link, title={ CovRadar: Continuously tracking and filtering SARS-CoV-2 mutations for molecular surveillance }, author={ Tang, Ming }, organization={Scitok}, month={ Nov }, day={ 4 }, year={ 2021 }, url = {https://scitok.com/project/p/b3a161cf}, }